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FIGURE LEGENDS OF SUPPLEMENTAL DATA
Supplemental Figure S1: Heat map of transcriptional co-responses of genes for PAPs in
comparison to marker genes. The heat map was generated using the A.thaliana Co-Response
Database (Steinhauser et al., 2004; Lisso et al., 2005; Usadel et al., 2005). As controls we
included the genes hcf152 (At3g09650, encoding a plastid PPR protein involved in build-up
of the photosynthetic apparatus), Elip1 (At3g22840, encoding the early light inducible protein
1 related to the Lhcb family), PSY (At5g17230 encoding the plastid-localised phytoene
synthase which controls carotenoid biosynthesis), PUR4 (At1g74260 encoding purine
biosynthesis 4, a plastid and mitochondrial enzyme involved in de novo purine biosynthesis),
nir1 (At2g15620, encoding nitrite reductase) and UGPase (At3g03250 encoding UDP-glucose
pyrophosphorylase, a cytosolic marker). A) Co-response of the respective genes indicated by
colour code displaying the non-parametric Spearman´s rho rank, which ranges from +1 to -1
(green to red). The value indicates positive (+1) or negative (-1) correlation or independency
in transcription of the respective gene under the investigated condition. Given is the spearman
rank based on array data from AtGenExpress within a set of miscellaneous treatments
(average rs 0.815), a developmental (average rs 0.901) and an abiotic stress (average rs 0.463)
series. B) Table of the data set used in A) including the statistical parameter p-value to
estimate the probability of correlation by random sampling (ranges from 0 to 1, the closer to 0
the better). The p-value is given by a colour code displaying the unlikeliness of correlation by
random sampling in red. Green and yellow: acceptable values, but close to the threshold of p-
value = 0.05.
Supplemental Figure S2: Computer translation of the unspliced rpoC1 gene of Arabidopsis.
The genomic information is translated into an amino-acid sequence given in single letter code.
Methionine and stop codons are given as Met and Stop, respectively. Red letters indicate
changed aminoacid composition of the protein if the intron remains in place. Note that already
the third translated codon of the intron results in a stop.
Supplemental Table S1: Detailed data of mass spectrometry of identified PEP proteins given
in Table I. Shown are the results of up to three independent measurements. Peptide: number
of identified peptides. Sign. peptide: number of significant peptides. z: charged state of the
candidate peptide. xC: calculated cross-correlation values. dCn: delta correlation (ΔCorr)
values. Accession: gi protein identification number. Ions: Number of experimental ions
matched with the theoretical ions for the peptide listed. Sequences: peptides matching the
determined masses (*: carboxyamidomethylation of cysteine, ^: oxidation of methionine, #:
phosphorylation of serine, threonine, tyrosine). Function: predicted function of the protein.
1,00 PAP1 At3g04260
0,90 PAP2 At1g74850
0,80 PAP3 At3g48500
0,70 PAP4 At5g23310
0,60 PAP5 At2g34640
0,50 PAP6 At3g54090
0,40 PAP7 At4g20130
0,30 PAP8 At1g21600
0,20 PAP9 At5g51100
0,10 PAP10 At3g06730
0,00 hcf 152 At3g09650
-0,10 Elip 1 At3g22840
-0,20 PSY At5g17230
-0,30 PUR4 At1g74260
-0,40 nir 1 At2g15620
-0,50 UGPase At3g03250
-0,60
-0,70
-0,80
-0,90
-1,00
PAP1 PAP2 PAP3 PAP4 PAP5 PAP6 PAP7 PAP8 PAP9 PAP10 hcf 152 Elip 1 PSY PUR4 nir 1 UGPase
PAP1 - 0,78 0,80 - 0,86 0,81 0,79 0,82 0,83 0,80 0,57 0,36 0,66 0,07 -0,10 -0,15
PAP2 0,78 - 0,76 - 0,70 0,72 0,85 0,80 0,70 0,77 0,77 0,44 0,77 0,28 0,06 0,05
PAP3 0,80 0,76 - - 0,84 0,82 0,75 0,74 0,78 0,83 0,60 0,46 0,63 0,16 -0,06 0,01
PAP4 - - - - - - - - - - - - - - - -
PAP5 0,86 0,70 0,84 - - 0,95 0,94 0,80 0,94 0,94 0,44 0,34 0,51 0,02 -0,13 -0,18
PAP6 0,81 0,72 0,82 - 0,95 - 0,79 0,88 0,89 0,87 0,47 0,44 0,58 -0,10 0,04 -0,11
PAP7 0,79 0,85 0,75 - 0,94 0,79 - 0,77 0,72 0,76 0,68 0,34 0,66 0,07 0,04 -0,04
PAP8 0,82 0,80 0,74 - 0,80 0,88 0,77 - 0,90 0,82 0,56 0,42 0,68 -0,10 0,05 -0,07
PAP9 0,83 0,70 0,78 - 0,94 0,89 0,72 0,90 - 0,82 0,49 0,41 0,64 -0,12 0,00 -0,06
PAP10 0,80 0,77 0,83 - 0,94 0,87 0,76 0,82 0,82 - 0,60 0,53 0,74 -0,10 -0,04 0,00
hcf 152 0,57 0,77 0,60 - 0,44 0,47 0,68 0,56 0,49 0,60 - 0,53 0,86 0,20 0,06 0,30
Elip 1 0,36 0,44 0,46 - 0,34 0,44 0,34 0,42 0,41 0,53 0,53 - 0,62 -0,06 0,12 0,50
PSY 0,66 0,77 0,63 - 0,51 0,58 0,66 0,68 0,64 0,74 0,86 0,62 - 0,11 0,09 0,31
PUR4 0,07 0,28 0,16 - 0,02 -0,10 0,07 -0,10 -0,12 -0,10 0,20 -0,06 0,11 - 0,14 0,16
nir 1 -0,10 0,06 -0,06 - -0,13 0,04 0,04 0,05 0,00 -0,04 0,06 0,12 0,09 0,14 - 0,44
UGPase -0,15 0,05 0,01 - -0,18 -0,11 -0,04 -0,07 -0,06 0,00 0,30 0,50 0,31 0,16 0,44 -
PAP1 PAP2 PAP3 PAP4 PAP5 PAP6 PAP7 PAP8 PAP9 PAP10 hcf 152 Elip 1 PSY PUR4 nir 1 UGPase
PAP1 - 0,89 0,92 0,92 0,94 0,93 0,93 0,83 0,94 0,93 0,58 -0,01 0,42 0,63 0,12 -0,18
PAP2 0,89 - 0,89 0,81 0,89 0,90 0,92 0,89 0,88 0,90 0,55 -0,19 0,45 0,63 0,29 -0,19
PAP3 0,92 0,89 - 0,91 0,96 0,95 0,93 0,82 0,92 0,93 0,50 -0,14 0,25 0,67 0,15 -0,31
PAP4 0,92 0,81 0,91 - 0,95 0,91 0,90 0,68 0,93 0,89 0,50 0,01 0,24 0,70 0,12 -0,14
PAP5 0,94 0,89 0,96 0,95 - 0,95 0,94 0,80 0,94 0,94 0,48 -0,12 0,24 0,70 0,14 -0,26
PAP6 0,93 0,90 0,95 0,91 0,95 - 0,93 0,88 0,95 0,95 0,53 -0,20 0,36 0,67 0,28 -0,16
PAP7 0,93 0,92 0,93 0,90 0,94 0,93 - 0,85 0,92 0,90 0,53 -0,12 0,35 0,68 0,24 -0,21
PAP8 0,83 0,89 0,82 0,68 0,80 0,88 0,85 - 0,82 0,84 0,52 -0,31 0,51 0,55 0,41 -0,17
PAP9 0,94 0,88 0,92 0,93 0,94 0,95 0,92 0,82 - 0,95 0,47 -0,07 0,40 0,59 0,19 -0,13
PAP10 0,93 0,90 0,93 0,89 0,94 0,95 0,90 0,84 0,95 - 0,47 -0,15 0,30 0,64 0,20 -0,25
hcf 152 0,58 0,55 0,50 0,50 0,48 0,53 0,53 0,52 0,47 0,47 - 0,31 0,48 0,39 0,17 -0,01
Elip 1 -0,01 -0,19 -0,14 0,01 -0,12 -0,20 -0,12 -0,31 -0,07 -0,15 0,31 - 0,13 -0,29 -0,38 0,11
PSY 0,42 0,45 0,25 0,24 0,24 0,36 0,35 0,51 0,40 0,30 0,48 0,13 - -0,04 0,35 0,29
PUR4 0,63 0,63 0,67 0,70 0,70 0,67 0,68 0,55 0,59 0,64 0,39 -0,29 -0,04 - 0,28 -0,17
nir 1 0,12 0,29 0,15 0,12 0,14 0,28 0,24 0,41 0,19 0,20 0,17 -0,38 0,35 0,28 - 0,50
UGPase -0,18 -0,19 -0,31 -0,14 -0,26 -0,16 -0,21 -0,17 -0,13 -0,25 -0,01 0,11 0,29 -0,17 0,50 -
PAP1 PAP2 PAP3 PAP4 PAP5 PAP6 PAP7 PAP8 PAP9 PAP10 hcf 152 Elip 1 PSY PUR4 nir 1 UGPase
PAP1 - 0,41 0,55 0,43 0,67 0,36 0,58 0,33 0,61 0,58 0,17 -0,41 0,06 0,21 -0,08 -0,34
PAP2 0,41 - 0,28 0,48 0,40 0,35 0,33 0,52 0,42 0,28 0,15 -0,42 0,05 0,23 0,36 -0,05
PAP3 0,55 0,28 - 0,42 0,62 0,55 0,72 0,46 0,45 0,46 0,23 -0,23 -0,08 0,30 -0,10 -0,52
PAP4 0,43 0,48 0,42 - 0,51 0,37 0,28 0,49 0,65 0,28 0,47 -0,23 0,03 0,25 0,45 -0,04
PAP5 0,67 0,40 0,62 0,51 - 0,71 0,63 0,22 0,57 0,80 0,18 -0,14 0,06 0,41 0,05 -0,50
PAP6 0,36 0,35 0,55 0,37 0,71 - 0,41 0,34 0,46 0,48 0,12 -0,05 -0,24 0,19 0,03 -0,37
PAP7 0,58 0,33 0,72 0,28 0,63 0,41 - 0,30 0,51 0,62 -0,01 -0,33 0,13 0,38 -0,15 -0,67
PAP8 0,33 0,52 0,46 0,49 0,22 0,34 0,30 - 0,45 -0,03 0,32 -0,57 -0,36 0,12 0,22 -0,19
PAP9 0,61 0,42 0,45 0,65 0,57 0,46 0,51 0,45 - 0,50 0,30 -0,42 0,09 0,35 0,29 -0,17
PAP10 0,58 0,28 0,46 0,28 0,80 0,48 0,62 -0,03 0,50 - -0,03 -0,07 0,25 0,52 -0,03 -0,48
hcf 152 0,17 0,15 0,23 0,47 0,18 0,12 -0,01 0,32 0,30 -0,03 - 0,12 -0,16 0,12 0,33 0,19
Elip 1 -0,41 -0,42 -0,23 -0,23 -0,14 -0,05 -0,33 -0,57 -0,42 -0,07 0,12 - 0,22 0,03 -0,07 0,23
PSY 0,06 0,05 -0,08 0,03 0,06 -0,24 0,13 -0,36 0,09 0,25 -0,16 0,22 - 0,31 0,25 -0,03
PUR4 0,21 0,23 0,30 0,25 0,41 0,19 0,38 0,12 0,35 0,52 0,12 0,03 0,31 - 0,21 -0,30
nir 1 -0,08 0,36 -0,10 0,45 0,05 0,03 -0,15 0,22 0,29 -0,03 0,33 -0,07 0,25 0,21 - 0,16
UGPase -0,34 -0,05 -0,52 -0,04 -0,50 -0,37 -0,67 -0,19 -0,17 -0,48 0,19 0,23 -0,03 -0,30 0,16 -
AGI Code of compared
genes
matrix of gene expression profile: developmental series
matrix of gene expression profile: abiotic stress series
A
colour code for the non-parametric Spearman´s rho rank
correlation determined using the A.thaliana Co-Response
Database
matrix of gene expression profile: miscellaneous series
rank id1 id2 spearman n pvalue CI power d(MI) d(E)
1At1g21600
[262502_at]
At5g51100
[248493_at]0.9048 51 0.00e+00
[0.8218,
0.9502]10000,0 0.6299 0.1562
2At2g34640
[266957_at]
At3g54090
[251935_at]0.8978 51 0.00e+00
[0.8095,
0.9464]10000,0 0.6329 0.1272
3At3g54090
[251935_at]
At5g51100
[248493_at]0.8881 51 0.00e+00
[0.7928,
0.9410]10000,0 0.6517 0.1455
4At3g54090
[251935_at]
At1g21600
[262502_at]0.8817 51 0.00e+00
[0.7818,
0.9375]10000,0 0.6022 0.1818
5At3g54090
[251935_at]
At3g06730
[258534_at]0.8719 51 2.22e-16
[0.7652,
0.9320]10000,0 0.5939 0.1523
6At3g04260
[258573_at]
At2g34640
[266957_at]0.8648 51 4.44e-16
[0.7533,
0.9280]10000,0 0.7054 0.1694
7At3g09650
[258696_at]
At5g17230
[250095_at]0.8618 51 4.44e-16
[0.7483,
0.9263]10000,0 0.5914 0.2188
8At1g74850
[262207_at]
At4g20130
[254502_at]0.8456 51 6.00e-15
[0.7216,
0.9170]10000,0 0.6216 0.1682
9At2g34640
[266957_at]
At1g21600
[262502_at]0.8428 51 8.88e-15
[0.7170,
0.9154]10000,0 0.7050 0.1772
10At3g48500
[252362_at]
At2g34640
[266957_at]0.8358 51 2.35e-14
[0.7057,
0.9114]10000,0 0.6292 0.1468
11At3g04260
[258573_at]
At5g51100
[248493_at]0.8292 51 5.68e-14
[0.6950,
0.9076]10000,0 0.7351 0.1510
12At3g48500
[252362_at]
At3g06730
[258534_at]0.8263 51 8.26e-14
[0.6904,
0.9059]10000,0 0.6358 0.1700
13At3g48500
[252362_at]
At3g54090
[251935_at]0.8245 51 1.04e-13
[0.6875,
0.9048]10000,0 0.6401 0.1362
14At1g21600
[262502_at]
At3g06730
[258534_at]0.8241 51 1.09e-13
[0.6869,
0.9046]10000,0 0.5799 0.1739
15At5g51100
[248493_at]
At3g06730
[258534_at]0.8163 51 2.88e-13
[0.6745,
0.9000]10000,0 0.6759 0.1814
16At3g04260
[258573_at]
At1g21600
[262502_at]0.8151 51 3.33e-13
[0.6726,
0.8993]10000,0 0.6126 0.1551
17At3g04260
[258573_at]
At3g54090
[251935_at]0.8087 51 7.08e-13
[0.6626,
0.8955]10000,0 0.6733 0.1622
18At2g34640
[266957_at]
At3g06730
[258534_at]0.8030 51 1.35e-12
[0.6537,
0.8921]10000,0 0.6946 0.1668
19At2g34640
[266957_at]
At5g51100
[248493_at]0.8013 51 1.64e-12
[0.6510,
0.8911]10000,0 0.7570 0.1981
20At1g74850
[262207_at]
At1g21600
[262502_at]0.7983 51 2.28e-12
[0.6464,
0.8893]10000,0 0.6396 0.1577
21At3g04260
[258573_at]
At3g48500
[252362_at]0.7974 51 2.51e-12
[0.6450,
0.8888]10000,0 0.6621 0.1694
22At3g04260
[258573_at]
At3g06730
[258534_at]0.7969 51 2.65e-12
[0.6442,
0.8885]10000,0 0.6126 0.1788
23At3g04260
[258573_at]
At4g20130
[254502_at]0.7949 51 3.29e-12
[0.6411,
0.8873]10000,0 0.6019 0.1653
24At3g54090
[251935_at]
At4g20130
[254502_at]0.7912 51 4.86e-12
[0.6354,
0.8851]10000,0 0.6439 0.1577
25At3g48500
[252362_at]
At5g51100
[248493_at]0.7789 51 1.69e-11
[0.6167,
0.8777]10000,0 0.6457 0.1749
26At3g04260
[258573_at]
At1g74850
[262207_at]0.7762 51 2.20e-11
[0.6126,
0.8760]10000,0 0.6685 0.1672
27At2g34640
[266957_at]
At4g20130
[254502_at]0.7762 51 2.20e-11
[0.6126,
0.8760]10000,0 0.7023 0.1723
28At4g20130
[254502_at]
At1g21600
[262502_at]0.7748 51 2.52e-11
[0.6105,
0.8752]10000,0 0.5853 0.1590
29At1g74850
[262207_at]
At3g06730
[258534_at]0.7720 51 3.30e-11
[0.6062,
0.8735]10000,0 0.6630 0.1862
30At1g74850
[262207_at]
At5g17230
[250095_at]0.7711 51 3.59e-11
[0.6049,
0.8729]10000,0 0.7033 0.2160
31At1g74850
[262207_at]
At3g09650
[258696_at]0.7667 51 5.42e-11
[0.5983,
0.8702]10000,0 0.6670 0.2379
32At1g74850
[262207_at]
At3g48500
[252362_at]0.7599 51 1.00e-10
[0.5881,
0.8661]10000,0 0.6792 0.1937
33At4g20130
[254502_at]
At3g06730
[258534_at]0.7592 51 1.07e-10
[0.5871,
0.8656]10000,0 0.5747 0.1516
34At3g48500
[252362_at]
At4g20130
[254502_at]0.7473 51 3.00e-10
[0.5695,
0.8583]10000,0 0.6985 0.1889
35At3g48500
[252362_at]
At1g21600
[262502_at]0.7444 51 3.82e-10
[0.5653,
0.8565]10000,0 0.6192 0.1959
36At3g06730
[258534_at]
At5g17230
[250095_at]0.7428 51 4.36e-10
[0.5630,
0.8555]10000,0 0.6716 0.2128
37At1g74850
[262207_at]
At3g54090
[251935_at]0.7209 51 2.43e-09
[0.5313,
0.8417]0.9999 0.6542 0.2132
38At4g20130
[254502_at]
At5g51100
[248493_at]0.7202 51 2.56e-09
[0.5303,
0.8413]0.9999 0.7302 0.1791
39At1g74850
[262207_at]
At2g34640
[266957_at]0.7046 51 7.91e-09
[0.5082,
0.8313]0.9997 0.7454 0.2253
40At1g74850
[262207_at]
At5g51100
[248493_at]0.6997 51 1.11e-08
[0.5013,
0.8282]0.9997 0.7479 0.2068
41At1g21600
[262502_at]
At5g17230
[250095_at]0.6776 51 4.73e-08
[0.4707,
0.8139]0.9993 0.7401 0.2363
42At4g20130
[254502_at]
At3g09650
[258696_at]0.6759 51 5.26e-08
[0.4684,
0.8127]0.9993 0.7540 0.2918
43At4g20130
[254502_at]
At5g17230
[250095_at]0.6644 51 1.06e-07
[0.4527,
0.8052]0.9989 0.6685 0.2052
44At3g04260
[258573_at]
At5g17230
[250095_at]0.6558 51 1.76e-07
[0.4411,
0.7995]0.9985 0.6790 0.2151
45At5g51100
[248493_at]
At5g17230
[250095_at]0.6446 51 3.31e-07
[0.4261,
0.7920]0.9979 0.8331 0.2168
46At3g48500
[252362_at]
At5g17230
[250095_at]0.6321 51 6.52e-07
[0.4095,
0.7837]0.9970 0.8081 0.2450
47At3g22840
[258321_at]
At5g17230
[250095_at]0.6167 51 1.44e-06
[0.3894,
0.7732]0.9955 0.8919 0.3806
48At3g06730
[258534_at]
At3g09650
[258696_at]0.6044 51 2.65e-06
[0.3734,
0.7648]0.9938 0.8444 0.2980
49At3g48500
[252362_at]
At3g09650
[258696_at]0.6004 51 3.20e-06
[0.3683,
0.7621]0.9931 0.8467 0.3037
50At3g54090
[251935_at]
At5g17230
[250095_at]0.5818 51 7.54e-06
[0.3446,
0.7492]0.9893 0.7468 0.2324
51At3g04260
[258573_at]
At3g09650
[258696_at]0.5668 51 1.45e-05
[0.3257,
0.7387]0.9851 0.8304 0.2845
52At1g21600
[262502_at]
At3g09650
[258696_at]0.5550 51 2.37e-05
[0.3110,
0.7304]0.9810 0.8290 0.2967
53At3g06730
[258534_at]
At3g22840
[258321_at]0.5338 51 5.49e-05
[0.2850,
0.7152]0.9713 0.9039 0.3904
54At3g09650
[258696_at]
At3g22840
[258321_at]0.5332 51 5.61e-05
[0.2842,
0.7148]0.9709 0.8632 0.3123
55At2g34640
[266957_at]
At5g17230
[250095_at]0.5064 51 1.50e-04
[0.2519,
0.6954]0.9534 0.7599 0.2818
56At3g22840
[258321_at]
At3g03250
[258849_at]0.4989 51 1.94e-04
[0.2429,
0.6899]0.9473 0.8831 0.3541
57At5g51100
[248493_at]
At3g09650
[258696_at]0.4901 51 2.62e-04
[0.2325,
0.6835]0.9394 0.8280 0.2625
58At3g54090
[251935_at]
At3g09650
[258696_at]0.4683 51 5.29e-04
[0.2069,
0.6673]0.9163 0.8610 0.3181
59At3g48500
[252362_at]
At3g22840
[258321_at]0.4580 51 7.26e-04
[0.1949,
0.6596]0.9034 0.9429 0.4228
60At2g34640
[266957_at]
At3g09650
[258696_at]0.4379 51 1.31e-03
[0.1718,
0.6445]0.8745 0.9103 0.3561
61At1g74850
[262207_at]
At3g22840
[258321_at]0.4377 51 1.32e-03
[0.1715,
0.6443]0.8742 0.9230 0.3952
62At3g54090
[251935_at]
At3g22840
[258321_at]0.4366 51 1.36e-03
[0.1703,
0.6435]0.8725 0.9532 0.4364
matrix of gene expression profile: miscellaneous series
B
63At2g15620
[265475_at]
At3g03250
[258849_at]0.4351 51 1.42e-03
[0.1686,
0.6423]0.8701 0.9154 0.4029
64At1g21600
[262502_at]
At3g22840
[258321_at]0.4177 51 2.29e-03
[0.1488,
0.6291]0.8404 0.9053 0.4095
65At5g51100
[248493_at]
At3g22840
[258321_at]0.4139 51 2.53e-03
[0.1445,
0.6262]0.8334 0.9931 0.3870
66At3g04260
[258573_at]
At3g22840
[258321_at]0.3554 51 1.05e-02
[0.0797,
0.5806]0.7044 0.8448 0.4188
67At2g34640
[266957_at]
At3g22840
[258321_at]0.3415 51 1.42e-02
[0.0647,
0.5695]0.6686 0.0000 0.4584
68At4g20130
[254502_at]
At3g22840
[258321_at]0.3351 51 1.62e-02
[0.0578,
0.5644]0.6517 0.9340 0.4363
69At5g17230
[250095_at]
At3g03250
[258849_at]0.3071 51 2.84e-02
[0.0278,
0.5419]0.5748 0.8957 0.4978
70At3g09650
[258696_at]
At3g03250
[258849_at]0.3004 51 3.22e-02
[0.0207,
0.5365]0.5559 0.8751 0.3609
71At1g74850
[262207_at]
At1g74260
[260250_at]0.2811 51 4.57e-02
[0.0004,
0.5207]0.5012 0.9580 0.3835
72At3g09650
[258696_at]
At1g74260
[260250_at]0.1965 51 1.67e-01
[-0.0863,
0.4500]0.2763 0.9791 0.3476
73At1g74260
[260250_at]
At3g03250
[258849_at]0.1606 51 2.60e-01
[-0.1221,
0.4192]0.1991 0.9939 0.4273
74At3g48500
[252362_at]
At1g74260
[260250_at]0.1572 51 2.71e-01
[-0.1255,
0.4163]0.1926 0.9471 0.4266
75At1g74260
[260250_at]
At2g15620
[265475_at]0.1383 51 3.33e-01
[-0.1440,
0.3998]0.1586 0.0000 0.3862
76At3g22840
[258321_at]
At2g15620
[265475_at]0.1219 51 3.94e-01
[-0.1600,
0.3855]0.1326 0.9938 0.4570
77At5g17230
[250095_at]
At1g74260
[260250_at]0.1061 51 4.59e-01
[-0.1754,
0.3715]0.1104 0.0000 0.4486
78At5g17230
[250095_at]
At2g15620
[265475_at]0.0893 51 5.33e-01
[-0.1915,
0.3566]0.0900 0.8912 0.3819
79At3g04260
[258573_at]
At1g74260
[260250_at]0.0746 51 6.03e-01
[-0.2056,
0.3435]0.0745 0.9849 0.4267
80At4g20130
[254502_at]
At1g74260
[260250_at]0.0731 51 6.10e-01
[-0.2070,
0.3421]0.0731 0.9867 0.4471
81At3g09650
[258696_at]
At2g15620
[265475_at]0.0647 51 6.52e-01
[-0.2150,
0.3346]0.0653 0.7660 0.3279
82At1g74850
[262207_at]
At2g15620
[265475_at]0.0633 51 6.59e-01
[-0.2163,
0.3333]0.0641 0.8631 0.4185
83At1g21600
[262502_at]
At2g15620
[265475_at]0.0489 51 7.33e-01
[-0.2299,
0.3203]0.0525 0.8854 0.4280
84At1g74850
[262207_at]
At3g03250
[258849_at]0.0484 51 7.36e-01
[-0.2304,
0.3199]0.0521 0.9057 0.5051
85At4g20130
[254502_at]
At2g15620
[265475_at]0.0441 51 7.59e-01
[-0.2345,
0.3160]0.0490 0.8399 0.4118
86At3g54090
[251935_at]
At2g15620
[265475_at]0.0424 51 7.68e-01
[-0.2361,
0.3144]0.0478 0.9232 0.3914
87At2g34640
[266957_at]
At1g74260
[260250_at]0.0158 51 9.12e-01
[-0.2609,
0.2901]0.0321 0.9447 0.4523
88At3g48500
[252362_at]
At3g03250
[258849_at]0.0052 51 9.71e-01
[-0.2708,
0.2804]0.0272 0.9409 0.5514
89At5g51100
[248493_at]
At2g15620
[265475_at]0.0025 51 9.86e-01
[-0.2733,
0.2779]0.0260 0.7670 0.3509
90At3g06730
[258534_at]
At3g03250
[258849_at]-0.0024 51 9.87e-01
[-0.2778,
0.2734]0.0260 0.0000 0.5300
91At4g20130
[254502_at]
At3g03250
[258849_at]-0.0351 51 8.07e-01
[-0.3078,
0.2429]0.0430 0.9925 0.5517
92At3g06730
[258534_at]
At2g15620
[265475_at]-0.0397 51 7.82e-01
[-0.3120,
0.2386]0.0460 0.8725 0.4240
93At3g48500
[252362_at]
At2g15620
[265475_at]-0.0592 51 6.80e-01
[-0.3296,
0.2202]0.0606 0.7585 0.4373
94At5g51100
[248493_at]
At3g03250
[258849_at]-0.0600 51 6.76e-01
[-0.3304,
0.2195]0.0613 0.9752 0.4897
95At3g22840
[258321_at]
At1g74260
[260250_at]-0.0614 51 6.69e-01
[-0.3316,
0.2181]0.0625 0.8000 0.4995
96At1g21600
[262502_at]
At3g03250
[258849_at]-0.0675 51 6.38e-01
[-0.3371,
0.2123]0.0678 0.0000 0.5339
97At1g21600
[262502_at]
At1g74260
[260250_at]-0.0965 51 5.01e-01
[-0.3630,
0.1846]0.0984 0.9627 0.4570
98At3g54090
[251935_at]
At1g74260
[260250_at]-0.0995 51 4.87e-01
[-0.3657,
0.1817]0.1020 0.9136 0.4348
99At3g06730
[258534_at]
At1g74260
[260250_at]-0.0995 51 4.87e-01
[-0.3657,
0.1817]0.1020 0.9369 0.4617
100At3g04260
[258573_at]
At2g15620
[265475_at]-0.1029 51 4.72e-01
[-0.3687,
0.1784]0.1063 0.8833 0.4279
101At3g54090
[251935_at]
At3g03250
[258849_at]-0.1089 51 4.47e-01
[-0.3740,
0.1727]0.1142 0.0000 0.5515
102At5g51100
[248493_at]
At1g74260
[260250_at]-0.1205 51 4.00e-01
[-0.3842,
0.1614]0.1305 0.8983 0.4182
103At2g34640
[266957_at]
At2g15620
[265475_at]-0.1262 51 3.78e-01
[-0.3892,
0.1559]0.1391 0.9365 0.4525
104At3g04260
[258573_at]
At3g03250
[258849_at]-0.1527 51 2.85e-01
[-0.4124,
0.1299]0.1841 0.9624 0.5457
105At2g34640
[266957_at]
At3g03250
[258849_at]-0.1842 51 1.96e-01
[-0.4395,
0.0986]0.2483 0.9825 0.5837
rank id1 id2 spearman n pvalue CI power d(MI) d(E)
1At3g48500
[252362_at]
At2g34640
[266957_at]0.9601 63 0.00e+00
[0.9277,
0.9782]10000,00 0.4272 0.1012
2At3g54090
[251935_at]
At5g51100
[248493_at]0.9533 63 0.00e+00
[0.9157,
0.9744]10000,00 0.4767 0.1035
3At2g34640
[266957_at]
At3g54090
[251935_at]0.9497 63 0.00e+00
[0.9094,
0.9723]10000,00 0.4854 0.1773
4At3g54090
[251935_at]
At3g06730
[258534_at]0.9497 63 0.00e+00
[0.9094,
0.9723]10000,00 0.5015 0.1070
5At5g23310
[249826_at]
At2g34640
[266957_at]0.9496 63 0.00e+00
[0.9092,
0.9723]10000,00 0.4570 0.1407
6At5g51100
[248493_at]
At3g06730
[258534_at]0.9483 63 0.00e+00
[0.9069,
0.9716]10000,00 0.5436 0.1327
7At3g48500
[252362_at]
At3g54090
[251935_at]0.9468 63 0.00e+00
[0.9043,
0.9707]10000,00 0.4673 0.1267
8At2g34640
[266957_at]
At3g06730
[258534_at]0.9437 63 0.00e+00
[0.8989,
0.9690]10000,00 0.4810 0.1811
9At2g34640
[266957_at]
At5g51100
[248493_at]0.9435 63 0.00e+00
[0.8986,
0.9688]10000,00 0.4290 0.1502
10At2g34640
[266957_at]
At4g20130
[254502_at]0.9431 63 0.00e+00
[0.8979,
0.9686]10000,00 0.4818 0.1517
11At3g04260
[258573_at]
At5g51100
[248493_at]0.9427 63 0.00e+00
[0.8972,
0.9684]10000,00 0.4860 0.1139
12At3g04260
[258573_at]
At2g34640
[266957_at]0.9392 63 0.00e+00
[0.8911,
0.9664]10000,00 0.4617 0.1586
13At3g04260
[258573_at]
At3g54090
[251935_at]0.9338 63 0.00e+00
[0.8819,
0.9633]10000,00 0.4831 0.1371
14At3g54090
[251935_at]
At4g20130
[254502_at]0.9322 63 0.00e+00
[0.8791,
0.9624]10000,00 0.4634 0.1245
15At3g48500
[252362_at]
At3g06730
[258534_at]0.9320 63 0.00e+00
[0.8788,
0.9623]10000,00 0.4679 0.1309
16At5g23310
[249826_at]
At5g51100
[248493_at]0.9303 63 0.00e+00
[0.8759,
0.9614]10000,00 0.4843 0.1323
17At3g48500
[252362_at]
At4g20130
[254502_at]0.9291 63 0.00e+00
[0.8738,
0.9607]10000,00 0.4539 0.1311
18At3g04260
[258573_at]
At4g20130
[254502_at]0.9260 63 0.00e+00
[0.8685,
0.9589]10000,00 0.4478 0.1328
19At3g04260
[258573_at]
At3g06730
[258534_at]0.9255 63 0.00e+00
[0.8677,
0.9586]10000,00 0.4821 0.1615
matrix of gene expression profile: developmental series
20At3g04260
[258573_at]
At3g48500
[252362_at]0.9246 63 0.00e+00
[0.8662,
0.9581]10000,00 0.4349 0.1409
21At3g48500
[252362_at]
At5g51100
[248493_at]0.9232 63 0.00e+00
[0.8638,
0.9573]10000,00 0.4932 0.1279
22At3g04260
[258573_at]
At5g23310
[249826_at]0.9198 63 0.00e+00
[0.8580,
0.9553]10000,00 0.4719 0.1579
23At1g74850
[262207_at]
At4g20130
[254502_at]0.9198 63 0.00e+00
[0.8580,
0.9553]10000,00 0.5679 0.1651
24At4g20130
[254502_at]
At5g51100
[248493_at]0.9188 63 0.00e+00
[0.8564,
0.9548]10000,00 0.4615 0.1298
25At5g23310
[249826_at]
At3g54090
[251935_at]0.9092 63 0.00e+00
[0.8403,
0.9492]10000,00 0.5147 0.1510
26At3g48500
[252362_at]
At5g23310
[249826_at]0.9074 63 0.00e+00
[0.8373,
0.9482]10000,00 0.5171 0.1391
27At4g20130
[254502_at]
At3g06730
[258534_at]0.9042 63 0.00e+00
[0.8320,
0.9463]10000,00 0.4828 0.1611
28At1g74850
[262207_at]
At3g54090
[251935_at]0.9035 63 0.00e+00
[0.8308,
0.9459]10000,00 0.5673 0.1809
29At5g23310
[249826_at]
At4g20130
[254502_at]0.9007 63 0.00e+00
[0.8262,
0.9443]10000,00 0.5229 0.1413
30At1g74850
[262207_at]
At3g06730
[258534_at]0.8950 63 0.00e+00
[0.8168,
0.9409]10000,00 0.5150 0.1792
31At5g23310
[249826_at]
At3g06730
[258534_at]0.8930 63 0.00e+00
[0.8135,
0.9397]10000,00 0.5926 0.1721
32At1g74850
[262207_at]
At3g48500
[252362_at]0.8921 63 0.00e+00
[0.8120,
0.9392]10000,00 0.5203 0.1432
33At3g04260
[258573_at]
At1g74850
[262207_at]0.8903 63 0.00e+00
[0.8091,
0.9381]10000,00 0.5413 0.1522
34At1g74850
[262207_at]
At1g21600
[262502_at]0.8896 63 0.00e+00
[0.8079,
0.9377]10000,00 0.5661 0.1718
35At1g74850
[262207_at]
At2g34640
[266957_at]0.8888 63 0.00e+00
[0.8066,
0.9373]10000,00 0.5386 0.1446
36At1g74850
[262207_at]
At5g51100
[248493_at]0.8808 63 0.00e+00
[0.7937,
0.9325]10000,00 0.5707 0.1719
37At3g54090
[251935_at]
At1g21600
[262502_at]0.8803 63 0.00e+00
[0.7928,
0.9322]10000,00 0.6042 0.1657
38At4g20130
[254502_at]
At1g21600
[262502_at]0.8496 63 0.00e+00
[0.7441,
0.9138]10000,00 0.5517 0.1872
39At1g21600
[262502_at]
At3g06730
[258534_at]0.8410 63 0.00e+00
[0.7307,
0.9085]10000,00 0.5478 0.1693
40At3g04260
[258573_at]
At1g21600
[262502_at]0.8289 63 0.00e+00
[0.7120,
0.9011]10000,00 0.5561 0.1704
41At3g48500
[252362_at]
At1g21600
[262502_at]0.8227 63 0.00e+00
[0.7026,
0.8972]10000,00 0.5787 0.1713
42At1g21600
[262502_at]
At5g51100
[248493_at]0.8150 63 4.44e-16
[0.6909,
0.8924]10000,00 0.6312 0.1838
43At1g74850
[262207_at]
At5g23310
[249826_at]0.8142 63 4.44e-16
[0.6897,
0.8919]10000,00 0.5986 0.1835
44At2g34640
[266957_at]
At1g21600
[262502_at]0.8041 63 2.22e-15
[0.6745,
0.8856]10000,00 0.5878 0.2088
45At5g23310
[249826_at]
At1g74260
[260250_at]0.7021 63 1.44e-10
[0.5291,
0.8191]10000,00 0.7116 0.2108
46At2g34640
[266957_at]
At1g74260
[260250_at]0.6988 63 1.91e-10
[0.5246,
0.8168]10000,00 0.7029 0.2310
47At5g23310
[249826_at]
At1g21600
[262502_at]0.6840 63 6.44e-10
[0.5046,
0.8068]0.9999 0.6677 0.2490
48At4g20130
[254502_at]
At1g74260
[260250_at]0.6804 63 8.56e-10
[0.4998,
0.8043]0.9999 0.7323 0.2453
49At3g54090
[251935_at]
At1g74260
[260250_at]0.6746 63 1.34e-09
[0.4921,
0.8003]0.9999 0.7338 0.2440
50At3g48500
[252362_at]
At1g74260
[260250_at]0.6745 63 1.35e-09
[0.4919,
0.8002]0.9999 0.6741 0.2206
51At3g06730
[258534_at]
At1g74260
[260250_at]0.6353 63 2.23e-08
[0.4405,
0.7730]0.9996 0.7163 0.2278
52At3g04260
[258573_at]
At1g74260
[260250_at]0.6264 63 3.99e-08
[0.4290,
0.7667]0.9994 0.7173 0.2677
53At1g74850
[262207_at]
At1g74260
[260250_at]0.6264 63 3.99e-08
[0.4290,
0.7667]0.9994 0.6956 0.2241
54At5g51100
[248493_at]
At1g74260
[260250_at]0.5861 63 4.49e-07
[0.3781,
0.7378]0.9978 0.7567 0.2641
55At3g04260
[258573_at]
At3g09650
[258696_at]0.5815 63 5.80e-07
[0.3723,
0.7344]0.9975 0.7856 0.2518
56At1g74850
[262207_at]
At3g09650
[258696_at]0.5462 63 3.65e-06
[0.3290,
0.7085]0.9932 0.8715 0.2352
57At1g21600
[262502_at]
At1g74260
[260250_at]0.5452 63 3.83e-06
[0.3278,
0.7078]0.9930 0.7764 0.2820
58At3g54090
[251935_at]
At3g09650
[258696_at]0.5316 63 7.36e-06
[0.3114,
0.6976]0.9902 0.8667 0.2859
59At4g20130
[254502_at]
At3g09650
[258696_at]0.5279 63 8.74e-06
[0.3069,
0.6949]0.9893 0.8333 0.2888
60At1g21600
[262502_at]
At3g09650
[258696_at]0.5246 63 1.02e-05
[0.3030,
0.6924]0.9884 0.8379 0.2925
61At1g21600
[262502_at]
At5g17230
[250095_at]0.5090 63 2.05e-05
[0.2844,
0.6806]0.9835 0.8011 0.3339
62At5g23310
[249826_at]
At3g09650
[258696_at]0.5026 63 2.70e-05
[0.2768,
0.6758]0.9810 0.9180 0.2842
63At3g48500
[252362_at]
At3g09650
[258696_at]0.5003 63 2.98e-05
[0.2741,
0.6740]0.9800 0.8906 0.2927
64At2g15620
[265475_at]
At3g03250
[258849_at]0.4954 63 3.66e-05
[0.2684,
0.6703]0.9778 0.8603 0.3073
65At2g34640
[266957_at]
At3g09650
[258696_at]0.4841 63 5.82e-05
[0.2551,
0.6617]0.9721 0.9087 0.3031
66At3g09650
[258696_at]
At5g17230
[250095_at]0.4822 63 6.29e-05
[0.2529,
0.6602]0.9710 0.8108 0.3379
67At5g51100
[248493_at]
At3g09650
[258696_at]0.4713 63 9.67e-05
[0.2402,
0.6518]0.9641 0.8531 0.2969
68At3g06730
[258534_at]
At3g09650
[258696_at]0.4707 63 9.90e-05
[0.2395,
0.6514]0.9637 0.8493 0.2886
69At1g74850
[262207_at]
At5g17230
[250095_at]0.4469 63 2.41e-04
[0.2122,
0.6329]0.9442 0.8650 0.3604
70At3g04260
[258573_at]
At5g17230
[250095_at]0.4158 63 7.01e-04
[0.1770,
0.6084]0.9081 0.7476 0.3162
71At1g21600
[262502_at]
At2g15620
[265475_at]0.4053 63 9.84e-04
[0.1652,
0.6000]0.8928 0.8670 0.3722
72At5g51100
[248493_at]
At5g17230
[250095_at]0.3954 63 1.34e-03
[0.1542,
0.5921]0.8769 0.8195 0.3345
73At3g09650
[258696_at]
At1g74260
[260250_at]0.3929 63 1.45e-03
[0.1514,
0.5901]0.8726 0.9841 0.2766
74At3g54090
[251935_at]
At5g17230
[250095_at]0.3642 63 3.34e-03
[0.1199,
0.5669]0.8168 0.7949 0.3263
75At4g20130
[254502_at]
At5g17230
[250095_at]0.3517 63 4.71e-03
[0.1062,
0.5568]0.7886 0.7286 0.3536
76At5g17230
[250095_at]
At2g15620
[265475_at]0.3509 63 4.81e-03
[0.1054,
0.5561]0.7867 0.9561 0.4043
77At3g09650
[258696_at]
At3g22840
[258321_at]0.3116 63 1.29e-02
[0.0631,
0.5237]0.6837 0.9142 0.3714
78At3g06730
[258534_at]
At5g17230
[250095_at]0.3041 63 1.54e-02
[0.0552,
0.5174]0.6621 0.8859 0.3487
79At1g74850
[262207_at]
At2g15620
[265475_at]0.2883 63 2.19e-02
[0.0385,
0.5042]0.6149 1000000,00 0.3889
80At5g17230
[250095_at]
At3g03250
[258849_at]0.2851 63 2.35e-02
[0.0351,
0.5015]0.6051 0.8011 0.3151
81At3g54090
[251935_at]
At2g15620
[265475_at]0.2803 63 2.61e-02
[0.0300,
0.4975]0.5903 0.9805 0.3669
82At1g74260
[260250_at]
At2g15620
[265475_at]0.2791 63 2.67e-02
[0.0288,
0.4965]0.5866 0.9518 0.3271
83At3g48500
[252362_at]
At5g17230
[250095_at]0.2488 63 4.93e-02
[-0.0028,
0.4708]0.4915 0.7041 0.3924
84At2g34640
[266957_at]
At5g17230
[250095_at]0.2442 63 5.38e-02
[-0.0075,
0.4668]0.4771 0.8424 0.4338
85At5g23310
[249826_at]
At5g17230
[250095_at]0.2431 63 5.49e-02
[-0.0087,
0.4659]0.4736 0.8738 0.3855
86At4g20130
[254502_at]
At2g15620
[265475_at]0.2353 63 6.34e-02
[-0.0167,
0.4592]0.4492 0.9752 0.3952
87At3g06730
[258534_at]
At2g15620
[265475_at]0.1972 63 1.21e-01
[-0.0556,
0.4262]0.3347 1000000,00 0.3720
88At5g51100
[248493_at]
At2g15620
[265475_at]0.1881 63 1.40e-01
[-0.0648,
0.4183]0.3092 0.8972 0.4072
89At3g09650
[258696_at]
At2g15620
[265475_at]0.1692 63 1.85e-01
[-0.0838,
0.4017]0.2591 0.9778 0.3872
90At3g48500
[252362_at]
At2g15620
[265475_at]0.1530 63 2.31e-01
[-0.1000,
0.3874]0.2199 1000000,00 0.4120
91At2g34640
[266957_at]
At2g15620
[265475_at]0.1357 63 2.89e-01
[-0.1171,
0.3720]0.1822 0.9780 0.4425
92At3g22840
[258321_at]
At5g17230
[250095_at]0.1262 63 3.24e-01
[-0.1265,
0.3635]0.1633 0.9474 0.4880
93At3g04260
[258573_at]
At2g15620
[265475_at]0.1233 63 3.36e-01
[-0.1293,
0.3609]0.1578 0.9044 0.4257
94At5g23310
[249826_at]
At2g15620
[265475_at]0.1212 63 3.44e-01
[-0.1314,
0.3590]0.1539 0.8744 0.4065
95At3g22840
[258321_at]
At3g03250
[258849_at]0.1060 63 4.08e-01
[-0.1463,
0.3453]0.1275 1000000,00 0.3915
96At5g23310
[249826_at]
At3g22840
[258321_at]0.0063 63 9.61e-01
[-0.2418,
0.2537]0.0280 0.8672 0.4709
97At3g04260
[258573_at]
At3g22840
[258321_at]-0.0067 63 9.58e-01
[-0.2540,
0.2415]0.0282 0.9292 0.4846
98At3g09650
[258696_at]
At3g03250
[258849_at]-0.0105 63 9.35e-01
[-0.2576,
0.2379]0.0301 0.8759 0.3408
99At5g17230
[250095_at]
At1g74260
[260250_at]-0.0406 63 7.52e-01
[-0.2856,
0.2094]0.0499 0.9701 0.4332
100At5g51100
[248493_at]
At3g22840
[258321_at]-0.0721 63 5.74e-01
[-0.3145,
0.1792]0.0806 0.9919 0.4989
101At2g34640
[266957_at]
At3g22840
[258321_at]-0.1155 63 3.67e-01
[-0.3539,
0.1370]0.1436 0.9793 0.5089
102At4g20130
[254502_at]
At3g22840
[258321_at]-0.1233 63 3.36e-01
[-0.3609,
0.1293]0.1578 0.9726 0.5274
103At5g51100
[248493_at]
At3g03250
[258849_at]-0.1292 63 3.13e-01
[-0.3662,
0.1235]0.1691 0.9277 0.3735
104At3g48500
[252362_at]
At3g22840
[258321_at]-0.1386 63 2.79e-01
[-0.3746,
0.1142]0.1882 0.9103 0.5026
105At5g23310
[249826_at]
At3g03250
[258849_at]-0.1406 63 2.72e-01
[-0.3764,
0.1123]0.1924 0.8786 0.3476
106At3g06730
[258534_at]
At3g22840
[258321_at]-0.1493 63 2.43e-01
[-0.3841,
0.1036]0.2115 0.9831 0.4988
107At3g54090
[251935_at]
At3g03250
[258849_at]-0.1568 63 2.20e-01
[-0.3907,
0.0962]0.2288 0.9486 0.3590
108At1g21600
[262502_at]
At3g03250
[258849_at]-0.1712 63 1.80e-01
[-0.4035,
0.0818]0.2642 0.9857 0.4118
109At1g74260
[260250_at]
At3g03250
[258849_at]-0.1727 63 1.76e-01
[-0.4048,
0.0803]0.2681 0.9200 0.3260
110At3g04260
[258573_at]
At3g03250
[258849_at]-0.1819 63 1.54e-01
[-0.4129,
0.0710]0.2923 0.9504 0.3826
111At1g74850
[262207_at]
At3g22840
[258321_at]-0.1949 63 1.26e-01
[-0.4242,
0.0579]0.3281 0.9539 0.4714
112At1g74850
[262207_at]
At3g03250
[258849_at]-0.1949 63 1.26e-01
[-0.4242,
0.0579]0.3281 0.9362 0.3746
113At3g54090
[251935_at]
At3g22840
[258321_at]-0.1974 63 1.21e-01
[-0.4264,
0.0554]0.3353 0.9237 0.5190
114At4g20130
[254502_at]
At3g03250
[258849_at]-0.2092 63 9.99e-02
[-0.4367,
0.0434]0.3696 0.8890 0.3856
115At3g06730
[258534_at]
At3g03250
[258849_at]-0.2512 63 4.70e-02
[-0.4728,
0.0003]0.4991 0.9653 0.3717
116At2g34640
[266957_at]
At3g03250
[258849_at]-0.2644 63 3.63e-02
[-0.4840, -
0.0134]0.5407 0.9244 0.4281
117At3g22840
[258321_at]
At1g74260
[260250_at]-0.2924 63 2.00e-02
[-0.5077, -
0.0428]0.6273 0.9261 0.4718
118At1g21600
[262502_at]
At3g22840
[258321_at]-0.3096 63 1.35e-02
[-0.5220, -
0.0610]0.6780 0.9216 0.5431
119At3g48500
[252362_at]
At3g03250
[258849_at]-0.3114 63 1.30e-02
[-0.5235, -
0.0629]0.6832 0.8839 0.4032
120At3g22840
[258321_at]
At2g15620
[265475_at]-0.3801 63 2.12e-03
[-0.5798, -
0.1373]0.8493 0.8877 0.5556
rank id1 id2 spearman n pvalue CI power d(MI) d(E)
1At2g34640
[266957_at]
At3g06730
[258534_at]0.8044 60 9.99e-15
[0.6709,
0.8874]10000,00 0.6780 0.1310
2At3g48500
[252362_at]
At4g20130
[254502_at]0.7237 60 6.45e-11
[0.5537,
0.8358]10000,00 0.7876 0.2957
3At2g34640
[266957_at]
At3g54090
[251935_at]0.7062 60 2.92e-10
[0.5295,
0.8242]10000,00 0.7725 0.1455
4At3g04260
[258573_at]
At2g34640
[266957_at]0.6698 60 4.85e-09
[0.4801,
0.7996]0.9998 0.8694 0.3027
5At5g23310
[249826_at]
At5g51100
[248493_at]0.6464 60 2.42e-08
[0.4492,
0.7836]0.9996 0.7921 0.2771
6At2g34640
[266957_at]
At4g20130
[254502_at]0.6254 60 9.18e-08
[0.4219,
0.7689]0.9991 0.7440 0.1985
7At4g20130
[254502_at]
At3g06730
[258534_at]0.6216 60 1.16e-07
[0.4170,
0.7663]0.9989 0.8506 0.2249
8At3g48500
[252362_at]
At2g34640
[266957_at]0.6194 60 1.32e-07
[0.4142,
0.7647]0.9988 0.8474 0.3640
9At3g04260
[258573_at]
At5g51100
[248493_at]0.6066 60 2.79e-07
[0.3978,
0.7557]0.9983 0.8920 0.2489
10At3g04260
[258573_at]
At3g06730
[258534_at]0.5846 60 9.37e-07
[0.3701,
0.7399]0.9966 0.8329 0.3409
11At3g04260
[258573_at]
At4g20130
[254502_at]0.5825 60 1.05e-06
[0.3675,
0.7384]0.9964 0.8758 0.2915
12At2g34640
[266957_at]
At5g51100
[248493_at]0.5697 60 2.03e-06
[0.3515,
0.7292]0.9949 0.9148 0.1862
13At3g04260
[258573_at]
At3g48500
[252362_at]0.5464 60 6.30e-06
[0.3229,
0.7122]0.9908 0.8508 0.2655
14At3g48500
[252362_at]
At3g54090
[251935_at]0.5462 60 6.36e-06
[0.3227,
0.7120]0.9908 0.8041 0.3203
15At3g06730
[258534_at]
At1g74260
[260250_at]0.5212 60 1.96e-05
[0.2925,
0.6935]0.9836 0.8890 0.3177
16At1g74850
[262207_at]
At1g21600
[262502_at]0.5195 60 2.11e-05
[0.2905,
0.6922]0.9830 0.9339 0.3135
17At5g23310
[249826_at]
At2g34640
[266957_at]0.5144 60 2.62e-05
[0.2844,
0.6884]0.9810 0.9278 0.3585
18At4g20130
[254502_at]
At5g51100
[248493_at]0.5093 60 3.24e-05
[0.2783,
0.6846]0.9788 0.9245 0.1988
19At5g51100
[248493_at]
At3g06730
[258534_at]0.5041 60 4.02e-05
[0.2722,
0.6807]0.9765 0.8888 0.2310
20At5g23310
[249826_at]
At1g21600
[262502_at]0.4928 60 6.33e-05
[0.2588,
0.6722]0.9705 0.9005 0.2513
21At1g74850
[262207_at]
At5g23310
[249826_at]0.4791 60 1.08e-04
[0.2428,
0.6617]0.9617 0.9136 0.2715
22At3g54090
[251935_at]
At3g06730
[258534_at]0.4761 60 1.21e-04
[0.2393,
0.6595]0.9596 0.8179 0.2183
23At5g23310
[249826_at]
At3g09650
[258696_at]0.4714 60 1.44e-04
[0.2338,
0.6559]0.9560 0.9790 0.2742
24At3g54090
[251935_at]
At5g51100
[248493_at]0.4600 60 2.18e-04
[0.2206,
0.6471]0.9464 0.8980 0.1712
25At3g48500
[252362_at]
At3g06730
[258534_at]0.4595 60 2.21e-04
[0.2201,
0.6467]0.9459 0.8908 0.4214
26At3g48500
[252362_at]
At1g21600
[262502_at]0.4554 60 2.56e-04
[0.2153,
0.6436]0.9420 0.9095 0.2875
27At3g48500
[252362_at]
At5g51100
[248493_at]0.4507 60 3.02e-04
[0.2099,
0.6399]0.9374 0.8982 0.3186
28At5g23310
[249826_at]
At2g15620
[265475_at]0.4474 60 3.38e-04
[0.2062,
0.6374]0.9339 0.9724 0.2724
29At1g21600
[262502_at]
At5g51100
[248493_at]0.4470 60 3.43e-04
[0.2057,
0.6371]0.9335 0.8271 0.2526
30At3g04260
[258573_at]
At5g23310
[249826_at]0.4345 60 5.23e-04
[0.1915,
0.6273]0.9191 0.9069 0.2487
31At1g74850
[262207_at]
At5g51100
[248493_at]0.4219 60 7.86e-04
[0.1772,
0.6175]0.9025 0.9085 0.3673
32At3g48500
[252362_at]
At5g23310
[249826_at]0.4176 60 9.01e-04
[0.1724,
0.6141]0.8963 0.9008 0.2395
33At2g34640
[266957_at]
At1g74260
[260250_at]0.4119 60 1.08e-03
[0.1660,
0.6096]0.8877 0.8807 0.2822
34At3g54090
[251935_at]
At4g20130
[254502_at]0.4101 60 1.14e-03
[0.1639,
0.6082]0.8848 0.8331 0.2251
35At3g04260
[258573_at]
At1g74850
[262207_at]0.4087 60 1.19e-03
[0.1624,
0.6071]0.8826 0.9396 0.3178
36At1g74850
[262207_at]
At2g34640
[266957_at]0.3954 60 1.77e-03
[0.1475,
0.5965]0.8601 0.9913 0.4333
37At4g20130
[254502_at]
At1g74260
[260250_at]0.3768 60 3.00e-03
[0.1270,
0.5817]0.8242 0.9049 0.2747
38At5g23310
[249826_at]
At3g54090
[251935_at]0.3708 60 3.54e-03
[0.1204,
0.5768]0.8115 0.9350 0.3276
39At3g04260
[258573_at]
At3g54090
[251935_at]0.3612 60 4.58e-03
[0.1099,
0.5691]0.7902 0.9453 0.2951
40At1g74850
[262207_at]
At2g15620
[265475_at]0.3550 60 5.38e-03
[0.1031,
0.5641]0.7757 0.9242 0.3219
41At5g51100
[248493_at]
At1g74260
[260250_at]0.3498 60 6.15e-03
[0.0975,
0.5599]0.7632 0.8910 0.2669
42At1g74850
[262207_at]
At3g54090
[251935_at]0.3474 60 6.54e-03
[0.0949,
0.5579]0.7573 0.9238 0.3963
43At3g54090
[251935_at]
At1g21600
[262502_at]0.3405 60 7.77e-03
[0.0874,
0.5523]0.7400 0.9759 0.3025
44At3g09650
[258696_at]
At2g15620
[265475_at]0.3335 60 9.22e-03
[0.0799,
0.5466]0.7218 1000000,00 0.3077
45At3g04260
[258573_at]
At1g21600
[262502_at]0.3303 60 9.95e-03
[0.0764,
0.5440]0.7133 0.9250 0.2825
46At1g74850
[262207_at]
At4g20130
[254502_at]0.3302 60 9.98e-03
[0.0763,
0.5439]0.7130 0.9925 0.4141
47At1g21600
[262502_at]
At3g09650
[258696_at]0.3214 60 1.23e-02
[0.0669,
0.5366]0.6890 0.9788 0.3590
48At5g17230
[250095_at]
At1g74260
[260250_at]0.3126 60 1.50e-02
[0.0575,
0.5294]0.6643 0.9219 0.3435
49At5g51100
[248493_at]
At3g09650
[258696_at]0.3049 60 1.78e-02
[0.0493,
0.5230]0.6421 0.9347 0.4164
50At3g48500
[252362_at]
At1g74260
[260250_at]0.3039 60 1.82e-02
[0.0482,
0.5222]0.6392 0.8201 0.2872
51At4g20130
[254502_at]
At1g21600
[262502_at]0.3001 60 1.98e-02
[0.0442,
0.5190]0.6281 0.9861 0.3306
52At5g51100
[248493_at]
At2g15620
[265475_at]0.2913 60 2.39e-02
[0.0349,
0.5117]0.6019 0.9248 0.3430
53At5g23310
[249826_at]
At4g20130
[254502_at]0.2846 60 2.75e-02
[0.0279,
0.5061]0.5817 0.9464 0.3466
54At1g74850
[262207_at]
At3g06730
[258534_at]0.2769 60 3.22e-02
[0.0198,
0.4997]0.5583 0.9870 0.4894
55At5g23310
[249826_at]
At3g06730
[258534_at]0.2768 60 3.23e-02
[0.0197,
0.4996]0.5580 0.9752 0.4255
56At1g74850
[262207_at]
At3g48500
[252362_at]0.2759 60 3.29e-02
[0.0187,
0.4988]0.5552 0.9094 0.3238
57At5g23310
[249826_at]
At1g74260
[260250_at]0.2540 60 5.02e-02
[-0.0041,
0.4804]0.4879 0.8766 0.2941
58At5g17230
[250095_at]
At2g15620
[265475_at]0.2523 60 5.18e-02
[-0.0058,
0.4789]0.4827 0.9361 0.3502
matrix of gene expression profile: abiotic stress series
59At3g06730
[258534_at]
At5g17230
[250095_at]0.2509 60 5.32e-02
[-0.0073,
0.4777]0.4784 1000000,00 0.3703
60At3g48500
[252362_at]
At3g09650
[258696_at]0.2343 60 7.16e-02
[-0.0244,
0.4636]0.4279 1000000,00 0.3307
61At3g22840
[258321_at]
At3g03250
[258849_at]0.2295 60 7.77e-02
[-0.0293,
0.4595]0.4135 0.9678 0.3411
62At1g74850
[262207_at]
At1g74260
[260250_at]0.2288 60 7.87e-02
[-0.0300,
0.4589]0.4114 1000000,00 0.3732
63At3g22840
[258321_at]
At5g17230
[250095_at]0.2215 60 8.90e-02
[-0.0375,
0.4526]0.3897 0.9678 0.4940
64At2g34640
[266957_at]
At1g21600
[262502_at]0.2158 60 9.77e-02
[-0.0433,
0.4477]0.3731 1000000,00 0.3575
65At1g21600
[262502_at]
At2g15620
[265475_at]0.2158 60 9.77e-02
[-0.0433,
0.4477]0.3731 1000000,00 0.3533
66At1g74260
[260250_at]
At2g15620
[265475_at]0.2111 60 1.05e-01
[-0.0481,
0.4437]0.3596 0.9587 0.3273
67At3g04260
[258573_at]
At1g74260
[260250_at]0.2098 60 1.08e-01
[-0.0494,
0.4426]0.3559 0.9059 0.3255
68At3g54090
[251935_at]
At1g74260
[260250_at]0.1944 60 1.37e-01
[-0.0650,
0.4292]0.3131 0.8947 0.2934
69At3g09650
[258696_at]
At3g03250
[258849_at]0.1887 60 1.49e-01
[-0.0708,
0.4243]0.2978 0.9304 0.2873
70At2g34640
[266957_at]
At3g09650
[258696_at]0.1750 60 1.81e-01
[-0.0846,
0.4123]0.2627 1000000,00 0.5159
71At3g04260
[258573_at]
At3g09650
[258696_at]0.1693 60 1.96e-01
[-0.0903,
0.4073]0.2487 1000000,00 0.3624
72At2g15620
[265475_at]
At3g03250
[258849_at]0.1565 60 2.32e-01
[-0.1030,
0.3961]0.2189 0.8952 0.3083
73At1g74850
[262207_at]
At3g09650
[258696_at]0.1510 60 2.49e-01
[-0.1085,
0.3912]0.2068 1000000,00 0.3656
74At4g20130
[254502_at]
At5g17230
[250095_at]0.1301 60 3.22e-01
[-0.1291,
0.3727]0.1645 0.9690 0.3506
75At3g09650
[258696_at]
At1g74260
[260250_at]0.1241 60 3.45e-01
[-0.1350,
0.3673]0.1534 1000000,00 0.4031
76At3g09650
[258696_at]
At3g22840
[258321_at]0.1226 60 3.51e-01
[-0.1365,
0.3660]0.1508 0.9394 0.3366
77At1g21600
[262502_at]
At1g74260
[260250_at]0.1223 60 3.52e-01
[-0.1368,
0.3657]0.1502 0.8853 0.3692
78At3g54090
[251935_at]
At3g09650
[258696_at]0.1192 60 3.64e-01
[-0.1398,
0.3630]0.1448 0.9917 0.4701
79At5g51100
[248493_at]
At5g17230
[250095_at]0.0936 60 4.77e-01
[-0.1648,
0.3400]0.1051 0.9732 0.3255
80At3g04260
[258573_at]
At5g17230
[250095_at]0.0631 60 6.32e-01
[-0.1942,
0.3123]0.0690 0.9832 0.3941
81At2g34640
[266957_at]
At5g17230
[250095_at]0.0573 60 6.64e-01
[-0.1997,
0.3070]0.0634 1000000,00 0.3658
82At1g74850
[262207_at]
At5g17230
[250095_at]0.0548 60 6.78e-01
[-0.2021,
0.3047]0.0610 0.8958 0.4443
83At2g34640
[266957_at]
At2g15620
[265475_at]0.0464 60 7.25e-01
[-0.2101,
0.2970]0.0537 0.9477 0.4323
84At3g54090
[251935_at]
At2g15620
[265475_at]0.0322 60 8.07e-01
[-0.2236,
0.2839]0.0430 0.9239 0.4108
85At3g22840
[258321_at]
At1g74260
[260250_at]0.0317 60 8.10e-01
[-0.2241,
0.2834]0.0427 0.9448 0.5065
86At5g23310
[249826_at]
At5g17230
[250095_at]0.0300 60 8.20e-01
[-0.2257,
0.2818]0.0415 1000000,00 0.3926
87At4g20130
[254502_at]
At3g09650
[258696_at]-0.0078 60 9.53e-01
[-0.2612,
0.2466]0.0286 1000000,00 0.4846
88At3g06730
[258534_at]
At2g15620
[265475_at]-0.0256 60 8.46e-01
[-0.2778,
0.2299]0.0386 0.9273 0.4867
89At1g21600
[262502_at]
At3g06730
[258534_at]-0.0274 60 8.35e-01
[-0.2794,
0.2282]0.0398 0.9752 0.4269
90At5g17230
[250095_at]
At3g03250
[258849_at]-0.0292 60 8.25e-01
[-0.2811,
0.2265]0.0410 0.9778 0.3959
91At3g06730
[258534_at]
At3g09650
[258696_at]-0.0331 60 8.02e-01
[-0.2847,
0.2228]0.0436 1000000,00 0.5700
92At5g23310
[249826_at]
At3g03250
[258849_at]-0.0380 60 7.73e-01
[-0.2892,
0.2181]0.0472 0.9611 0.3159
93At1g74850
[262207_at]
At3g03250
[258849_at]-0.0460 60 7.27e-01
[-0.2966,
0.2105]0.0534 0.9008 0.3774
94At3g54090
[251935_at]
At3g22840
[258321_at]-0.0502 60 7.03e-01
[-0.3004,
0.2065]0.0570 0.9854 0.5760
95At3g22840
[258321_at]
At2g15620
[265475_at]-0.0667 60 6.13e-01
[-0.3155,
0.1907]0.0727 0.9868 0.4400
96At3g06730
[258534_at]
At3g22840
[258321_at]-0.0705 60 5.92e-01
[-0.3190,
0.1871]0.0767 1000000,00 0.6574
97At3g04260
[258573_at]
At2g15620
[265475_at]-0.0767 60 5.60e-01
[-0.3246,
0.1811]0.0837 0.9433 0.3762
98At3g48500
[252362_at]
At5g17230
[250095_at]-0.0805 60 5.41e-01
[-0.3281,
0.1775]0.0882 0.8953 0.4446
99At3g48500
[252362_at]
At2g15620
[265475_at]-0.1004 60 4.45e-01
[-0.3461,
0.1582]0.1148 0.9965 0.3632
100At2g34640
[266957_at]
At3g22840
[258321_at]-0.1393 60 2.88e-01
[-0.3809,
0.1201]0.1823 0.9417 0.6242
101At4g20130
[254502_at]
At2g15620
[265475_at]-0.1456 60 2.67e-01
[-0.3864,
0.1138]0.1953 0.9403 0.4154
102At3g09650
[258696_at]
At5g17230
[250095_at]-0.1557 60 2.35e-01
[-0.3954,
0.1038]0.2171 0.9853 0.4730
103At5g51100
[248493_at]
At3g03250
[258849_at]-0.1699 60 1.94e-01
[-0.4079,
0.0897]0.2502 0.9222 0.3760
104At1g21600
[262502_at]
At3g03250
[258849_at]-0.1914 60 1.43e-01
[-0.4266,
0.0681]0.3050 0.9831 0.3859
105At5g23310
[249826_at]
At3g22840
[258321_at]-0.2276 60 8.03e-02
[-0.4579,
0.0313]0.4078 0.9877 0.4463
106At3g48500
[252362_at]
At3g22840
[258321_at]-0.2335 60 7.26e-02
[-0.4629,
0.0252]0.4255 0.9324 0.4705
107At3g54090
[251935_at]
At5g17230
[250095_at]-0.2422 60 6.23e-02
[-0.4703,
0.0163]0.4518 0.9336 0.4015
108At1g74260
[260250_at]
At3g03250
[258849_at]-0.2961 60 2.16e-02
[-0.5157, -
0.0400]0.6162 0.8247 0.4063
109At4g20130
[254502_at]
At3g22840
[258321_at]-0.3300 60 1.00e-02
[-0.5437, -
0.0761]0.7125 0.9808 0.5967
110At3g04260
[258573_at]
At3g03250
[258849_at]-0.3434 60 7.23e-03
[-0.5547, -
0.0905]0.7473 0.9717 0.3754
111At1g21600
[262502_at]
At5g17230
[250095_at]-0.3621 60 4.47e-03
[-0.5698, -
0.1109]0.7922 0.8556 0.4671
112At3g54090
[251935_at]
At3g03250
[258849_at]-0.3652 60 4.12e-03
[-0.5723, -
0.1143]0.7992 0.8883 0.4462
113At3g04260
[258573_at]
At3g22840
[258321_at]-0.4085 60 1.19e-03
[-0.6069, -
0.1621]0.8823 0.9446 0.5152
114At1g74850
[262207_at]
At3g22840
[258321_at]-0.4239 60 7.38e-04
[-0.6190, -
0.1795]0.9052 0.9211 0.5262
115At5g51100
[248493_at]
At3g22840
[258321_at]-0.4244 60 7.26e-04
[-0.6194, -
0.1800]0.9059 0.9432 0.5532
116At3g06730
[258534_at]
At3g03250
[258849_at]-0.4789 60 1.08e-04
[-0.6616, -
0.2425]0.9616 0.8019 0.5240
117At2g34640
[266957_at]
At3g03250
[258849_at]-0.5010 60 4.56e-05
[-0.6784, -
0.2685]0.9749 0.8245 0.4894
118At3g48500
[252362_at]
At3g03250
[258849_at]-0.5185 60 2.20e-05
[-0.6915, -
0.2893]0.9826 0.8188 0.3982
119At1g21600
[262502_at]
At3g22840
[258321_at]-0.5663 60 2.40e-06
[-0.7267, -
0.3473]0.9945 0.7645 0.5706
120At4g20130
[254502_at]
At3g03250
[258849_at]-0.6743 60 3.50e-09
[-0.8027, -
0.4861]0.9999 0.8953 0.4816
Supplemental Figure 2
Met I D R Y K H Q Q L R I G L V S P Q Q I S A W A T K I I P N G E I V G E V T K P Y T F H Y K T N K P E K D G L F C E R I F GP I K S G I C A C G N Y R V I G D E K E D P K F C E Q C G V E F V D S R I R R Y QMet G Y I K L T C P V T H V W Y L K R L P SY I A N L L D K P L K E L E G L V Y C D V Stop F D R N F S F T D Stop E Stop Stop T L I P F N Q F G Met P S I Stop H V SStop K E Stop H E A Q N C G C I Q Y S Q I K K K A I G L W S I Q K F K L I G V P R E K K T L F C R I T H S L I F L K E N K F G FL Stop F Y I I L F L Y K V N K Y VMet V A E V Y T S H I S F K N I V A Stop P S R Stop R R T Stop K I E W N N T Stop T N KS R Met N F K A F L S L K V K S I P A F E G K Stop T T Q E F D I F F C R N F Stop F T K E F K Stop K S K K N Stop L N QStop N V G W F A L R T Stop V R R R F F L G F S L Y F I K Stop N L K A R P L S L F G I T T Stop A G Stop E E T FMet S G FE G G D L I V D P I P I F L L L G P Stop L K N L L S Y D Y E V H L NMet K F N P G N T A S H F F L L L K V S I Y F E I E K F L LG R V L S E N N Stop P I Stop I C E L L Stop K I R W Stop N G N N Stop E K K G L R G Met N G K I E K L Stop E E K I FStop L D V W N Stop L S I L F E Q I Stop N P N G W F Y V S Y R F F L P S Stop D P S F R Stop K G V N Stop Stop V Q I LMet N S I E E L S I G T I L L P I Y Stop Q Q V D L H R G N Stop Stop C V R K N W Y K K P W I H F L IMet E S V D N P StopG Met V I I R F T S H F Q Met Stop L K A K R E D F A R L C L G N G S I I R G A R Stop L S L D L H F H Y I A V D C L A KStop Q Stop S S S R H L Stop F V V Stop L D N T W L R T Stop E L L R V K F V K K S R L S G K S F K K S C R G I P Y Y Stop IE H L P Y I D Stop A Y S H S N L F StopW K D A L F V Y I H Stop F V R G SMet Q T LMet G I K W L FMet C L Y L Stop RL K Q R L V Y L C F L I Stop I S Y L Q L L E I P F R Y R L K I C L L D SMet Y Stop R A A L V E V F V Q T D I I H V I E K T I KMet K E F T K Q T I S I R K N P F F A I PMet Met Q L E L I D R K K S I Stop I V L C G F G G N Stop I N A L L L Q E K F L S KF TMet N L L V T IMet R FMet H T I Stop Stop Stop E V Stop K K K I F V Y I F E P Q L V I F L F I E K S R K L Y K V F L K PV HMet I P
component measurement peptide sign. peptide z xC dCn accession ions sequence functionRpoC2 1 6 6 3 1,58 0,16 gi|139389408 15‐48 (R)RKSS#GILKY#GT#PK RNA polymerase beta subunit‐2 [Olimarabidopsis pumila]
2 3.24 0.45 gi|139390338 17‐22 (R)FITFGTQSISIR RNA polymerase beta subunit‐2 [Aethionema cordifolium]2 3.17 0.23 gi|12229937 17‐30 (R)IFNLDPYSNLVLNPFK RPOC2_SINAL DNA‐directed RNA polymerase beta'' chain (PEP) (Plastid‐encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit)2 3.97 0.46 gi|139389408 21‐38 (R)GLMSDPQGQMIDLPIQSNLR RNA polymerase beta subunit‐2 [Olimarabidopsis pumila]2 3.76 0.53 21‐32 (K)ENVVLGGVIPAGTGFNK "2 2.17 0.13 10‐16 (R)IFIQTLIGR "
RpoB 1 4 4 2 4,32 0,43 gi|139389410 20‐28 (R)LNLNIPQNNIFLLPR RNA polymerase beta subunit [Olimarabidopsis pumila]2 3,55 0,47 18‐24 (R)DILAAADHLIGM^K2 2,40 0,19 17‐34 (R)TGDPFEQPVIIGKPYILK2 3,26 0,37 gi|12644277 20‐36 (K)IILSGNENTLSIPLIM^YQR RPOB_SINAL DNA‐directed RNA polymerase subunit beta (PEP) (Plastid‐encoded RNA polymerase subunit beta) (RNA polymerase subunit beta)
2 3 3 2 3,33 0,31 gi|139389410 423 (R)TGDPFEQPVIIGK RNA polymerase beta subunit [Olimarabidopsis pumila]2 2,83 0,45 440 (R)KLVFSELYEASK2 2,83 0,27 1114 (R)SVADLLQDQLGLALAR
PAP1 1 2 2 2 3,27 0,41 gi|15229259 18‐26 (R)FLGEGLIETSVESK PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding [Arabidopsis thaliana]2 2,41 0,35 14‐22 (R)IVELIDALDAM^R2 3,85 0,48 17‐20 (K)HLQMIGVQLLK2 1,07 0,05 10‐20 (R)PLPETMIALVR3 2,70 0,27 22‐68 (K)ELGAGQRPLPETMIALVR2 2,41 0,29 13‐18 (R)GLEILAAMEK
2 3 3 2 3,83 0,51 gi|15229259 20‐38 (R)TLQSEGLPVLGDASESDYM^R PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding [Arabidopsis thaliana]2 3,79 0,33 16‐26 (R)FLGEGLIETSVESK2 2,84 0,33 gi|42566980 15‐34 (R)TLPTWSDIDLPPIPSAER PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) [Arabidopsis thaliana]
3 14 11 2 5,47 0,62 gi|15229259 343‐346 (K)AGDHSNALDISYEMEAAGR PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding [Arabidopsis thaliana]2 4,71 0,53 499‐502 (R)TLQSEGLPVLGDASESDYM^R2 4,71 0,44 1068‐1090 (R)IVELIDALDAMR2 4,28 0,43 942‐946 (R)IVELIDALDAM^R2 4,21 0,51 907‐910 (R)TLQSEGLPVLGDASESDYMR2 3,85 0,43 714 (K)HLQMIGVQLLK2 3,48 0,40 890‐894 (R)FLGEGLIETSVESK2 3,36 0,39 940 (R)GLEILAAMEK2 3,22 0,51 1024‐1038 (R)LTFMDELMER2 3,03 0,45 279‐283 (K)LHEGDTEFWK2 2,87 0,23 950‐954 (K)ELGAGQRPLPETMIALVR2 2,59 0,07 452‐458 (R)RFLGEGLIETSVESK2 1,83 0,05 928 (K)M^VVSELKEELEAQGLPIDGTR2 1,75 0,32 490‐503 (R)LTFM^DELMER
PAP2 1 1 1 2 3,58 0,47 gi|75194055 20‐26 (R)SVFSYTALINAYGR PP124_ARATH Pentatricopeptide repeat‐containing protein At1g74850, chloroplast precursor (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2)2 1 1 2 2,16 0,37 gi|75194055 12‐20 (K)YSYDVESLINK PP124_ARATH Pentatricopeptide repeat‐containing protein At1g74850, chloroplast precursor (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2)3 9 8 2 4,96 0,52 gi|75194055 1094‐1098 (K)GDYDDDSNWQIVEYVLDK PP124_ARATH Pentatricopeptide repeat‐containing protein At1g74850, chloroplast precursor (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2)
2 3,93 0,43 1103‐1106 (K)LSLNDFALVFK2 3,87 0,44 439‐443 (K)YSYDVESLINK3 3,80 0,24 1070‐1074 (R)TMNDGGIVPDLTTYSHLVETFGK2 3,61 0,55 523‐526 (R)GLGDEAEMVFR2 2,83 0,34 372‐374 (R)YETSLELLDR2 2,36 0,20 376‐383 (R)NGRYETSLELLDR2 2,27 0,24 278‐282 (K)LVWSVDVHR1 1,97 0,08 378‐382 (R)QLFLEMK
RpoC1‐l 1 5 3 2 3,91 0,52 gi|139389409 19‐28 (R)IGLVSPQQISAWATK RNA polymerase beta subunit‐1 [Olimarabidopsis pumila]2 3,57 0,01 16‐18 (R)INLDSPLWLR2 3,47 0,42 19‐22 (R)NNTLTDLLTTSR2 2,83 0,41 15‐26 (R)LGIQSFQPILVEGR3 2,29 0,05 23‐80 (R)RYQMGY#IKLTCPVT#HVW^Y#LKR
2 3 3 2 2,75 0,46 gi|139389409 16‐24 (R)SVIVVGPSLSLHR RNA polymerase beta subunit‐1 [Olimarabidopsis pumila]2 2,74 0,13 14‐26 (R)LGIQSFQPILVEGR2 2,03 0,18 gi|12644278 12‐30 (K)YSIPLFFTTQGFEIFR RPOC1_SINAL DNA‐directed RNA polymerase beta' chain (PEP) (Plastid‐encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit)
PAP3 1 1 1 2 2,00 0,25 gi|145332787 12‐22 (R)QALGLPLEEPGR PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding [Arabidopsis thaliana]2 7 6 2 4,08 0,52 gi|145332787 18‐32 (R)GWAPWEEILTPEADFAR PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding [Arabidopsis thaliana]
2 3,01 0,31 13‐36 (K)DQYDPTSALYQYDYWGEPK2 2,69 0,46 16‐22 (R)QALGLPLEEPGR2 2,50 0,26 14‐40 (R)KSLNEGEEVPLQSPEAIEAFK3 1,63 0,01 23‐64 (R)DIS#SRQALGLPLEEPGR2 3,51 0,40 15‐38 (K)SLNEGEEVPLQSPEAIEAFK2 3,02 0,47 15‐22 (R)QALGLPLEEPGR
3 11 8 2 4,13 0,51 gi|145332787 554‐558 (K)GNVWYDMSYDDAIK PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding [Arabidopsis thaliana]2 3,96 0,50 1096‐1098 (R)GWAPWEEILTPEADFAR2 3,91 0,40 467‐470 (K)SLNEGEEVPLQSPEAIEAFK3 3,16 0,07 279 (R)KSLNEGEEVPLQSPEAIEAFK2 3,08 0,49 280‐282 (R)QALGLPLEEPGR2 2,94 0,15 927 (K)GNDWFWIR2 2,76 0,09 392‐395 (R)FRFPLELR3 2,24 0,09 280‐282 (R)DIS#SRQALGLPLEEPGR1 2,15 0,10 331‐335 (R)VWLEDLDK2 1,88 0,38 654 (K)FDFPPIFHR1 1,29 0,08 236‐262 (K)ELEFIR
PAP4 1 4 4 2 3,08 0,31 gi|15237281 16‐20 (R)LYGYTMEELIK FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase [Arabidopsis thaliana]2 2,92 0,46 19‐28 (K)TPPYPLDALEPYMSR2 2,09 0,33 13‐28 (R)AEAFVNLGEPNIPIA2 2,68 0,38 gi|149364134 14‐30 (K)TPPYPLDALEPYMSQR iron‐containing superoxide dismutase [Brassica napus]
2 2 2 2 2,51 0,41 gi|15237281 15‐28 (R)AEAFVNLGEPNIPIA FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase [Arabidopsis thaliana]2 2,41 0,25 11‐20 (R)LYGYTM^EELIK
RpoC1‐s 1 7 7 2 3,95 0,48 gi|139389409 17‐26 (R)LGIQSFQPILVEGR RNA polymerase beta subunit‐1 [Olimarabidopsis pumila]2 3,77 0,48 17‐20 (R)IIIENSLVEWK2 3,33 0,50 17‐22 (R)NNTLTDLLTTSR2 2,87 0,42 16‐28 (R)IGLVSPQQISAWATK2 2,62 0,27 14‐28 (K)LVQEAVDTLLDNGIR2 1,93 0,22 11‐16 (R)EQLADLDLR2 3,43 0,45 gi|139389408 17‐20 (R)VLADDIYIGSR RNA polymerase beta subunit‐1 [Olimarabidopsis pumila]
2 7 7 2 4,07 0,32 gi|139389410 19‐30 (R)SVADLLQDQLGLALAR RNA polymerase beta subunit [Olimarabidopsis pumila]2 4,06 0,40 19‐28 (R)LNLNIPQNNIFLLPR2 3,88 0,49 18‐26 (R)SSGHYALVTQQPLR2 3,70 0,35 15‐24 (R)TGDPFEQPVIIGK2 3,61 0,44 17‐32 (R)QVALDSGVPAIAEHEGK2 3,03 0,48 15‐20 (R)TNPLTQIVHGR2 2,84 0,27 13‐20 (R)AILGIQVSTSK
3 6 5 2 4,28 0,56 gi|139389409 19‐28 (R)IGLVSPQQISAWATK RNA polymerase beta subunit‐1 [Olimarabidopsis pumila]2 3,65 0,32 17‐20 (R)IIIENSLVEWK2 3,54 0,41 18‐24 (R)SVIVVGPSLSLHR2 3,15 0,49 17‐22 (R)NNTLTDLLTTSR1 2,10 0,34 12‐16 (K)SFSDVIEGK2 1,66 0,20 10‐16 (R)EQLADLDLR
PAP5 1 ‐ ‐2 3 1 2 3,55 0,47 gi|30686151 16‐30 (R)ASIPGEDYWPEGTSSR PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) [Arabidopsis thaliana]
2 1,60 0,14 10‐20 (R)RRPDVETVFLK2 1,03 0,13 7‐18 (R)RPDVETVFLK
3 3 3 3 6,44 0,44 gi|30686151 375‐378 (K)HFEETGEDENTQLIEMFSHQTDR PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) [Arabidopsis thaliana]2 2,64 0,45 267 (R)ASIPGEDYWPEGTSSR2 2,39 0,31 948‐951 (K)EGPMAFYSEWVK
PAP6 1 ‐ ‐2 3 2 2 4,65 0,41 gi|15232415 21‐32 (R)FAVAAGIIAQW^TIGAVR pfkB‐type carbohydrate kinase family protein [Arabidopsis thaliana]
2 3,13 0,40 15‐18 (K)LLVVTDGTLR3 1,52 0,03 20‐108 (R)RFLT#PKASINGSGITNGAAAETT#S#KPSR 2 3,69 0,57 gi|15232415 18‐24 (R)TGSGDAVVAGIMR pfkB‐type carbohydrate kinase family protein [Arabidopsis thaliana]2 3,33 0,15 gi|42573071 12‐34 (K)EGNS#PFT#Y#ILVDNQTKTR pfkB‐type carbohydrate kinase family protein [Arabidopsis thaliana]
3 4 3 2 3,29 0,55 gi|15232415 251 (R)TGSGDAVVAGIMR pfkB‐type carbohydrate kinase family protein [Arabidopsis thaliana]2 2,92 0,34 262 (K)LLVVTDGTLR2 2,85 0,27 663‐674 (K)MLQWDPPEFGR1 1,07 0,07 343 (K)EFVPVVR
PAP7 1 ‐ ‐2 3 3 2 3,12 0,34 gi|42566980 16‐34 (R)TLPTWSDIDLPPIPSAER PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) [Arabidopsis thaliana]
2 2,23 0,30 15‐26 (K)KGEEMTINYMPGQK2 2,41 0,40 11‐22 (K)EGPDGFGVYASK
3 2 2 2 3,45 0,48 gi|42566980 959‐962 (R)TLPTWSDIDLPPIPSAER PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) [Arabidopsis thaliana]1 1,77 0,14 239 (R)AYGVEFK
RpoA 1 3 3 3 3,85 0,34 gi|6685903 27/72 (K)SNIHTLLDLLNNSQEDLIK DNA‐directed RNA polymerase alpha chain (PEP) (Plastid‐encoded RNA polymerase subunit alpha)2 3,77 0,56 17/20 (K)GQADTIGIAMR 2 3.53 0.4405116 9/12 (R)ALLGEIEGTCITR
2 1 1 2 3,09 0,37 gi|139389450 15‐36 (K)SNIHTLLDLLNNSQEDLIK RNA polymerase alpha subunit [Olimarabidopsis pumila]3 2 1 1 2,17 0,25 gi|139389450 578‐582 (R)FILSPLMK RNA polymerase alpha subunit [Olimarabidopsis pumila]
2 1,60 0,21 226 (K)EALHEASR
PAP8 1 ‐ ‐2 ‐ ‐3 3 3 2 3,33 0,42 gi|79318316 274‐278 (R)DDPTTVIEREEWTK PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) [Arabidopsis thaliana]
2 2,88 0,35 250‐254 (R)KPPDPDNDVYDFR2 2,01 0,40 932 (K)LRDFSVSNWF1 1,60 0,07 1039‐1042 (R)DFSVSNWF
PAP9 1 5 5 2 3,48 0,47 gi|15241373 17‐22 (R)LDVANAVNPLPK FSD2 (FE SUPEROXIDE DISMUTASE 2); iron superoxide dismutase [Arabidopsis thaliana]2 3,18 0,48 16‐18 (K)LVSWETVSTR2 3,47 0,40 gi|15237281 18‐20 (R)LYGYTMEELIK FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase [Arabidopsis thaliana]2 2,94 0,37 14‐16 (K)DFGSFTNFR2 2,57 0,30 gi|149364134 14‐30 (K)TPPYPLDALEPYMSQR iron‐containing superoxide dismutase [Brassica napus]
2 3 3 2 3,77 0,44 gi|15241373 480‐485 (R)LDVANAVNPLPK FSD2 (FE SUPEROXIDE DISMUTASE 2); iron superoxide dismutase [Arabidopsis thaliana]2 2,93 0,14 496‐500 (K)LVSWETVSTR2 2,62 0,41 382‐385 (R)ETLDYHWGK
PAP4 1 ‐ ‐2 2 2 2 3,47 0,40 gi|15237281 878‐882 (R)LYGYTMEELIK FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase [Arabidopsis thaliana]
2 2,94 0,37 510‐514 (K)DFGSFTNFR3 9 8 2 4,53 0,47 gi|15237281 1112‐1115 (K)YINTFLNHLVSWNAAMSR FSD3 (FE SUPEROXIDE DISMUTASE 3); iron superoxide dismutase [Arabidopsis thaliana]
2 3,48 0,51 1018‐1023 (R)AEAFVNLGEPNIPIA2 3,44 0,34 931‐934 (R)LYGYTMEELIK2 3,38 0,38 394‐399 (R)LYGYTM^EELIK2 3,01 0,45 1035‐1038 (K)TPPYPLDALEPYMSR2 2,98 0,42 912‐915 (K)TPPYPLDALEPYM^SR2 2,88 0,33 763‐766 (K)DFGSFTNFR2 2,25 0,23 294‐300 (R)TLEVHWGK1 1,39 0,11 240‐244 (R)GYVDNLNK
PAP10 1 2 2 2 3,52 0,36 gi|15230779 15‐20 (K)LSAQELQELVK thioredoxin family protein [Arabidopsis thaliana]2 3,21 0,46 17‐34 (R)GLPTLFFISPDPSKDAIR
2 ‐ ‐3 3 3 2 4,06 0,36 gi|15230779 17/22 (K)KLSAQELQELVK thioredoxin family protein [Arabidopsis thaliana]
2 3,38 0,41 17/20 (K)VDTDDEYEFAR2 2,90 0,39 17/26 (R)GLPTLFFISPDPSK
