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INFORMATION FACILITY. A Darwin-Core Archive solution to publishing and indexing taxonomic data within the GBIF network. GLOBAL BIODIVERSITY. David Remsen ECAT Program Officer September 2010. WWW.GBIF.ORG. Thanks: Peter Desmet , Canadensys - (graphics). - PowerPoint PPT Presentation
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GLOBALBIODIVERSITY
INFORMATIONFACILITY
David Remsen
ECAT Program Officer
September 2010
WWW.GBIF.ORG
A Darwin-Core Archive solution to publishing and indexing taxonomic data within the GBIF network
Thanks: Peter Desmet, Canadensys- (graphics)
GBIF - A global discovery point for biodiversity data
GBIF: Extend global discovery to taxonomic data
Enabling global discovery: Objectives
• Develop capacity to document and publish taxonomic data– A simple exchange format– Suite of publication tools
• Promote the publication of taxonomic data in a common format
• Build and maintain an index of published checklists
• Build services on this index that address user needs in the GBIF network
Enabling global discovery: Outcomes
• Embed taxonomy into large-scale biodiversity data/info. management– Improved Interoperability among resources– Improved Precision and Recall within resources
• Increase efficiencies in taxon-related linking, mapping, data-mining, and data management
• Increased recognition of the value and relevance of taxonomy within all biodiversity information interchange (large and small)
Darwin Core Archive
Data Format
Darwin Core
• Ratified in 2009• Significant additions/refinements• Set of terms– http://rs.tdwg.org/dwc/terms/index.htm
• Simple Darwin Core (Subset)• Express as Text– http://
rs.tdwg.org/dwc/terms/guides/text/index.htm
Core components – single file
Taxon
• Classification• Synonymy• Publication Details
• Simple to Export• Simple to Manage• Comma-Separated Values Text File
Extending Darwin Core
Taxon
Types and Specimens
Bibliography
one-to-m
any
one-to-many
• Extensions defined via simple schema• Darwin Core or other terms• Linked to controlled vocabularies• One taxa – many extension records
• Simple to Export• Simple to Manage• Comma-Separated Values Text File
Metafile describes the set
Metafile Core
Describes
Types and Specimens
Bibliography
one-to-m
any
one-to-many
Describes
Describes
Core + Set of Extensions
MetafileTaxa
Types and Specimens
Bibliography
one-to-m
any
one-to-many
VernacularNames
Distribution
one-to-many
one-to-m
any
describes
“GNA Simple Exchange Format”
Metadata documents resource
MetafileTaxa
Types and Specimens
Bibliography
one-to-m
any
one-to-many
VernacularNames
Distribution
one-to-many
one-to-m
any
describes
GBIF EML profile
documents
A Darwin Core Archive
Validator
http://tools.gbif.org/dwca-validator/Status: Under Evaluation
Darwin Core Archive
Publishing Options
Integrated Publishing Toolkit
• Compose EML Metadata
• Connect to database• Upload Data• Transform to DWCA• Publish via GBIF
Status: Stable release – end 2010 http://ipt.gbif.org
Guidelines and Best Practices
• DB Admin skills• Database export• No tools required• Successful pilots• Ireland• NBN UK• Norway• Avian Knowledge
network• IPNI• IRMNG
Status: Drafts for November campaign (see roadmap)
Authoring Descriptor XML
Status: Ready for Review
Metafile
http://tools.gbif.org/dwca-assistant/
Excel Spreadsheet Templates
Status: Ready for Review/Testing
Spreadsheet Processor
http://tools.gbif.org/spreadsheet-processor/Status: Ready for Review
Checklist Bank
Status: Dev version in place. Integration with GBIF data portal 2011
http://ecat-dev.gbif.org/
Roadmap
• Evaluation and testing and refinement Q4 2010
• Consolidate docs and publishing for ver. 1 Simple Exchange Format using DWC-A
• Target current taxonomic data export publishers– Small grants to pilot DWC-A exports
• Seed funds to GBIF Nodes– Publish regional and thematic species checklists– Evaluate 1.0 extensions and vocabularies